PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0196s0022.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 1116aa    MW: 117827 Da    PI: 7.9045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0196s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA22.41.7e-073063332
                  GATA  3 nCgttkTplWRrgp...dgnkt.LCnaCGlyyrk 32
                           Cgt+++++WR g+    g++  LC +CGl y  
  Sphfalx0196s0022.1.p 30 KCGTSSSTNWRPGWllrAGHTAdLCDSCGLAYEQ 63
                          7**************99999989*******9965 PP

2B3542.9e-17419519199
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k l+ sd+++ grlvlpk +ae++   + ++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ 
  Sphfalx0196s0022.1.p 419 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLKIQDVTGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMRLQAGDTVTFSRL 506
                           89**************************555556678***************9989999999***9.********************76 PP

                           SSSEE..EEEEE-S CS
                    B3  86 grsefelvvkvfrk 99 
                           +  +++lv++ +r+
  Sphfalx0196s0022.1.p 507 E-ADGKLVMGYRRA 519
                           5.677778877775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.104.3E-52363IPR013088Zinc finger, NHR/GATA-type
Gene3DG3DSA:2.40.330.104.6E-28416519IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-19416518IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-22417518No hitNo description
PfamPF023621.1E-14419519IPR003340B3 DNA binding domain
PROSITE profilePS5086311.124419520IPR003340B3 DNA binding domain
SMARTSM010191.5E-19419519IPR003340B3 DNA binding domain
PROSITE profilePS5105013.455658708IPR011124Zinc finger, CW-type
PfamPF074961.2E-9663705IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1116 aa     Download sequence    Send to blast
MRDAGLGLEV VQGGVQESAA VRTKVCWNVK CGTSSSTNWR PGWLLRAGHT ADLCDSCGLA  60
YEQSRFCETF HSDDAGWRTC NSCKKRVHCG CIASVYGLVL LDKGGVECSG CVREDDVIAS  120
STSLQAGKKH GQQQLLATAL GHAANGKEVA DPALRGWGEG GGYGAAALVA CQSEPWQPPS  180
SSAAACEPHA NNARGQQLAA PWDPDLKIEQ QLMESSRSLR PAAKFQDQEM GFPSNLELHA  240
NNLDSSMKSV AAACSPKETR ETAATGGGGK GPPESPPGHV ESSSPSSKSG TDQMPTGLTL  300
SGGSSPVKQV TGEGGQQGGG SETGAAGESA GHGKASTTVG SYRPPRVRQL LPRPTIAGAA  360
AAVTLEPAFD PQAPLRVARP PGEGRGRNQL LPRYWPRITD QELQQITSGD SNTVITPLFE  420
KMLSASDAGR IGRLVLPKAC AEAYFPPIHQ PEGLPLKIQD VTGKEWVFQF RFWPNNNSRM  480
YVLEGVTPCI QSMRLQAGDT VTFSRLEADG KLVMGYRRAP SSLSSQDATG IATTPPSNNG  540
LPCASYAAPQ SLDGWASSKG GASAKLKDSS ALTLAAAAAA TQQMDRKRGR PLGSKSKRLR  600
LDTDDALLLK SSWEEAQELL RPPPSAVPTT ITIDGHEFEE YSEPPVFAKK TYPNITPSGE  660
HEQWAQCDDC SNWRRLPATA FVPLRWSCSQ NTWDLTRAQC NAPQEVSNEK LEMILRQVSG  720
QEDGKQGGGS GSGSGSMRMM LVPTVAGDII TTTAAAAAAA AAGLDTLAQA AAATTGPVSP  780
MRTTKHPRHR PGCSCIVCIQ PPSGKGPKHK ATCTCNVCVT VKRRFKTMMQ RRKKRQFERE  840
SELARKKRGW ARDDISDSAS LLDAASRPET SAGGGGGGAV AEENPTTPLV YQSDDVGGGA  900
DEGGPSKAAA TAAAIDLNSQ PDRDERVSMV RLVQDAGKPL STYLHQQHLM TLCAPDHPLS  960
DKVSEEEDPN SSSSREEVAS QTSSKAHADS GMQLVAAAAV TPMQQGQQQQ PQSPFMVDIA  1020
ELSSHMESWD PRAVKPVAEP SGDSVHSSSS KQEYNMLNQL VVSNAPASSK KYATGAGRGR  1080
QICSGCGEPI GSAAKVCRRC GTSTAFGKKK RSVPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-1441853013126DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1821833KRRFKTMMQRRKK
2821834KRRFKTMMQRRKKR
3832847KKRQFERESELARKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001758247.10.0predicted protein, partial
SwissprotQ6Z3U31e-170Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA9RVJ40.0A9RVJ4_PHYPA; Predicted protein (Fragment)
STRINGPP1S31_242V6.10.0(Physcomitrella patens)
STRINGPP1S42_132V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-142high-level expression of sugar-inducible gene 2